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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015820363.1_cds_XP_016500356.1_14193
CDS Infomation

[gene=LOC107818819] [db_xref=GeneID:107818819] [protein=auxin response factor 1-like] [protein_id=XP_016500356.1] [location=join(39762..39807,40340..40455,40697..40792,40874..40930,41047..41199,41306..41390,41838..41928,42040..42204,42670..42789,42914..42989,43553..43718,43796..44250,44552..44742,45307..45454)] [gbkey=CDS]
Sequence

ATGGCACACCTTGCGGCAAATCACTTCGGTGGCGGGGCTCATCCAGTGGCTCCAAATGAG
GCATTATACAAGGAACTCTGGCATGCCTGTGCTGGACCTCTTGTAACAGTTCCTCGTGAA
GGGGAAATAGTTTATTATTTCCCACAGGGTCACATGGAACAGCTTGAAGCATCGACACAT
CAGGGATTAGACCAACAACTTCCTTCTTTCAATTTGCCAGCTAAAATATTATGCAAAGTG
ATGAATATTCAACTTCGGGCTGAGTCAGATACCGATGAGGTGTATGCACAGATAACTCTG
CTTCCTGAACAAGATCAAGGCGAGATCACAAGGCCTTATCCTCCTCTCCCTGAACCTCAA
AAGTGCACTGTCCATTCGTTTTGCAAGACTCTTACTGCATCTGATACAAGCACCCATGGT
GGGTTCTCTGTTCTTCGGAGGCATGCAGATGAATGCCTGCCCCCACTGGATATGACCCAA
CAGCCACCATGGCAGGAATTGGTTGCTAGTGATCTACATGGCAATGAATGGCACTTTCGC
CACATTTTTCGAGGTCAACCTAGGCGCCACTTGCTCACAACTGGGTGGAGTGTTTTTGTC
AGTGCAAAAAAGTTGGTTGCTGGAGATGCTTTCATCTTTCTCAGGGGAGAGAATGGGGAG
CTTCGAGTTGGTGTTAGGAGACTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATT
TCAAGTCACAGTATGCATCTGGGTGTTCTTGCAACTGCATCTCATGCCATCTCGACTGGG
ACCCTCTTCTCTGTGTATTATAAGCCTAGGACTAGTCAGTCTGAATTCATTGTCAGTGTG
AACAAATATCTTGAAGCACGAAATCACAAGCTTTCTGTTGGGATGAGGTTTAAGATGAGA
TTTGAGGGTGAGGAAGTTCCAGAAAGAAGGTTCAGTGGAACAATTGTTGGTGTTGGTGAA
AATACATCATCTAGATGGCCTGATTCTGAATGGAGATCCTTGAAGGTTCACTGGGATGAA
CCATCGTCAATCTTGCGTCCAGATAGGGTTTCATCATGGGAAATAGAACCGCTTGTCACA
GCAACACCTACAAACACCCAGCCTCCTCAAAGAAATAAGCGTGCTCGACCTCAAGTTTTA
CCGTCGCCAGTGCAAGAACTTCCTGCTTTAGGAATGTGGAAGTCTCCTGGTGATTCTCCA
TCATCGTTCCCATACTGTGATCCATCTCGTGGGCGAGATCTCTACCCATCACCGAAACTT
TCTTCTGCTGCAAGTGGTCTGGGTTATGGCGAGAACAGTTCCATGCCTCTTTCCTCCAAA
TCCATGTACTGGTCAAGTCAATCAGATACATGTACAGAGTCTATCACACCGGCTAGTGAA
AAGAGACCGGCTAATGGATATAGGTTATTCGGAATTGAGTTGCTGGATCGTCCAACTGTA
GATGAAACTTCACCAGTTGCTATGCCGAGTGCTCTTGTGGAGAATCAGCCAGCTGCATCT
TTAGATGTTGATTCTGGAAACTCAGAACCATCAAATCCTATTCCTTCAGTAAGTTGTGAG
CCTGAAAAGTCATCTCTGAGGTCTCCCCATGAGTCTCAAAGCAAACAAATCCGCAGTTGC
ACTAAGGTTCATATGCAAGGGAAGGCAGTTGGGAGGGCAGTTGATCTCACAAGGTTAGAT
AGTTATGAAGATCTGCTTAAGAAATTGGAGGAGATGTTTGAAATTGAAGGGGAACTTCGT
GATTCGACCAAGAAATGGCAGGTAGTCTACACAGATGATGAGGATGACATGATGATGGTT
GGAGATGATCCATGGCACGAGTTCTGCAGCATGGTTAGAAAAATTTACGTCTATACAGTT
GAGGAAGCCAAAAAACTGTCACCAAAGATAAAACTTCCTGTTGACGACGTGAAACCAGGC
AAACCAGTTTCGGGTGCAACTGTTAGCAATGAGGAGAAAGCATGA

Peptide Sequence

PEP ID

XP_016500356.1
PEP Infomation

PREDICTED: auxin response factor 1-like [Nicotiana tabacum]
Sequence

MAHLAANHFGGGAHPVAPNEALYKELWHACAGPLVTVPREGEIVYYFPQGHMEQLEASTH
QGLDQQLPSFNLPAKILCKVMNIQLRAESDTDEVYAQITLLPEQDQGEITRPYPPLPEPQ
KCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQQPPWQELVASDLHGNEWHFR
HIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVI
SSHSMHLGVLATASHAISTGTLFSVYYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMR
FEGEEVPERRFSGTIVGVGENTSSRWPDSEWRSLKVHWDEPSSILRPDRVSSWEIEPLVT
ATPTNTQPPQRNKRARPQVLPSPVQELPALGMWKSPGDSPSSFPYCDPSRGRDLYPSPKL
SSAASGLGYGENSSMPLSSKSMYWSSQSDTCTESITPASEKRPANGYRLFGIELLDRPTV
DETSPVAMPSALVENQPAASLDVDSGNSEPSNPIPSVSCEPEKSSLRSPHESQSKQIRSC
TKVHMQGKAVGRAVDLTRLDSYEDLLKKLEEMFEIEGELRDSTKKWQVVYTDDEDDMMMV
GDDPWHEFCSMVRKIYVYTVEEAKKLSPKIKLPVDDVKPGKPVSGATVSNEEKA

Transcript Sequence

Gene sequence data has not been registered.